The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999

نویسندگان

  • Amos Bairoch
  • Rolf Apweiler
چکیده

SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases. Recent developments of the database include: cross-references to additional databases; a variety of new documentation files and improvements to TrEMBL, a computer annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDS) in the EMBL nucleotide sequence database, except the CDS already included in SWISS-PROT. The URLs for SWISS-PROT on the WWW are: http://www.expasy.ch/sprot and http://www. ebi.ac.uk/sprot

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The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998

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Removing Redundancy in SWISS-PROT and TrEMBL

SUMMARY One of the distinguishing criteria of the SWISS-PROT protein sequence data bank is minimal redundancy. The introduction of TrEMBL as a supplementary database ensured the comprehensiveness of SWISS-PROT and TrEMBL but introduced some degree of redundancy. We developed a strategy to identify the redundancy present within and between SWISS-PROT and TrEMBL and its subsequent removal. AVAI...

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عنوان ژورنال:
  • Nucleic acids research

دوره 27 1  شماره 

صفحات  -

تاریخ انتشار 1999